Apples to Apples

Why Foodomics Matters for Precision Nutrition

Eva Keohane

FFAR Fellow, Colorado State University

Fort Collins, CO

Most people have heard the phrase, “An apple a day keeps the doctor away.” But what if those apples are not the same? Imagine one grown on a rainy, organic farm in New York and another produced conventionally in Colorado’s dry, windy climate. Both are apples, yet their chemical makeup is likely quite different.

Research indicates that wild and domesticated apple varieties can vary widely in compounds called polyphenols—plant chemicals linked to health benefits such as improved gut and heart function. The varied characteristics of polyphenols can affect how they are absorbed in the body and interact with the gut microbiome–the trillions of microbes that help digest food and regulate health. Gut microbes break down polyphenols into smaller molecules that we can absorb, and along the way, polyphenols can support the growth of beneficial microbes. To truly understand how diet shapes health, we need to have a more nuanced view of what’s actually in the foods people eat, down to the chemical level. This is my area of research as a FFAR Fellow at Colorado State University (CSU).

In a recent review of 38 clinical studies on polyphenols and the gut microbiome, my CSU colleagues and I found that researchers often did a good job measuring changes in the gut microbiome, blood chemistry and health outcomes for humans, but paid far less attention to confounding variation that might derive from the foods themselves. None of the studies used untargeted methods that capture a broader range of food chemicals, and less than half used targeted approaches that measure a handful of known compounds. When studying the health parameters of humans, researchers relied on more advanced tools, yet the findings were inconsistent. One likely reason is that the variability of the foods—the apples, teas or berries used in these studies—wasn’t fully captured. Without that information, it’s hard to explain why results differ from one study to another.

These differences matter. Nutrition science is moving toward precision nutrition, tailoring dietary recommendations to individuals or groups based on their unique biology. But if we don’t know the detailed chemical composition of the foods we study, our conclusions about diet and health risk being incomplete or misleading. The possible solution to this is called foodomics – the comprehensive chemical profiling of foods. Much of this research fits under the umbrella of what has come to be called the Periodic Table of Food. The findings from foodomics research can be included in clinical trials to control for hidden variability, discover new bioactive compounds and make nutrition research more reproducible. Right now, clinical trials are good at analyzing people, but incomplete because they do not analyze foods.

Nutrition science is moving toward precision nutrition, tailoring dietary recommendations to individuals or groups based on their unique biology. But if we don’t know the detailed chemical composition of the foods we study, our conclusions about diet and health risk being incomplete or misleading. Eva Keohane
FFAR Fellow, Colorado State University

In the lab of Dr. Jessica Prenni at Colorado State University, we use high-throughput instrumentation to study small molecules in foods with the goal of bringing standardized approaches to researchers and clinicians to better understand food composition. Implementing these methods will not only enhance the reliability of clinical study outcomes, but also enable large scale discoveries that could advance precision nutrition research. To fully understand the diet–microbiome–health connection, we need both sides of the equation. So, when we say an apple a day keeps the doctor away, the real question is: which apple and why?

The FFAR Fellows Program has provided me with the skills and support to bridge chemistry, food and human health in meaningful ways. I am especially grateful for the professional development trainings which have equipped me to address interdisciplinary challenges, and for the mentorship program which allowed me to learn from outstanding scientists and leaders in food and agriculture. I would also like to thank the Foundation for Food and Agriculture Research and the American Heart Association for sponsoring my fellowship, Dr. Jessica Prenni for her inspiring leadership in interdisciplinary science and my FFAR Fellows cohort for their continued support and sense of community.